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c1galt1lb core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117761302, updated on 19-Mar-2024

Summary

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Gene symbol
c1galt1lb
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b
See related
EnsemblRapid:ENSHHIG00000013865
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Also known as
c1galt1b
Orthologs
zebrafish all
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Genomic context

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See c1galt1lb in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 5 NC_047155.1 (15897674..15903621)

Chromosome 5 - NC_047155.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1b Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene tachykinin precursor 3b Neighboring gene apolipoprotein F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047155.1 Chromosome 5 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
Names
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047155.1 Reference fHipHip1.pri Primary Assembly

    Range
    15897674..15903621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034585054.1 → XP_034440945.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

    Related
    ENSHHIP00000038712.1, ENSHHIT00000039141.1
Nucleotide Protein
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Molecular Biology Databases