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LOC117758031 exostosin-1 [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117758031, updated on 19-Mar-2024

Summary

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Gene symbol
LOC117758031
Gene description
exostosin-1
See related
EnsemblRapid:ENSHHIG00000013520
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See LOC117758031 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 24 NC_047174.1 (3036006..3198113, complement)

Chromosome 24 - NC_047174.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33-like Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene uncharacterized LOC117758038 Neighboring gene uncharacterized LOC117758039 Neighboring gene uncharacterized LOC117758040 Neighboring gene sterile alpha motif domain-containing protein 12-like Neighboring gene scavenger receptor class A, member 5 (putative)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047174.1 Chromosome 24 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047174.1 Reference fHipHip1.pri Primary Assembly

    Range
    3036006..3198113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034579352.1 → XP_034435243.1  exostosin-1

    Related
    ENSHHIP00000038009.1, ENSHHIT00000038437.1
    Conserved Domains (2) summary
    pfam03016
    Location:131 → 417
    Exostosin; Exostosin family
    pfam09258
    Location:501 → 746
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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