U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

capn3b calpain 3b [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117757990, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSHHIG00000013511
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Also known as
calpain-3
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See capn3b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
23
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 24 NC_047174.1 (5761343..5773022, complement)

Chromosome 24 - NC_047174.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 2b Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene macoilin Neighboring gene nuclear receptor binding protein 1 Neighboring gene cysteine-rich venom protein-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047174.1 Chromosome 24 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047174.1 Reference fHipHip1.pri Primary Assembly

    Range
    5761343..5773022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034579254.1 → XP_034435145.1  calpain-3b isoform X2

    Related
    ENSHHIP00000037673.1, ENSHHIT00000038101.1

  2. XM_034579253.1 → XP_034435144.1  calpain-3b isoform X1

    UniProtKB/TrEMBL
    D2IKJ9
    Related
    ENSHHIP00000037669.1, ENSHHIT00000038097.1

  3. XM_034579255.1 → XP_034435146.1  calpain-3b isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases