U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117757491, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSHHIG00000017550
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tmtc1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 23 NC_047173.1 (235761..326221)

Chromosome 23 - NC_047173.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117757499 Neighboring gene importin 8 Neighboring gene uncharacterized LOC117757501 Neighboring gene uncharacterized LOC117757497 Neighboring gene uncharacterized LOC117757500 Neighboring gene nuclear transcription factor Y, beta a Neighboring gene podocalyxin-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047173.1 Chromosome 23 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047173.1 Reference fHipHip1.pri Primary Assembly

    Range
    235761..326221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034578699.1 → XP_034434590.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    ENSHHIP00000049040.1, ENSHHIT00000050007.1

  2. XM_034578701.1 → XP_034434592.1  protein O-mannosyl-transferase TMTC1 isoform X3

  3. XM_034578702.1 → XP_034434593.1  protein O-mannosyl-transferase TMTC1 isoform X4

    Related
    ENSHHIP00000049043.1, ENSHHIT00000050010.1

  4. XM_034578703.1 → XP_034434594.1  protein O-mannosyl-transferase TMTC1 isoform X5

  5. XM_034578700.1 → XP_034434591.1  protein O-mannosyl-transferase TMTC1 isoform X2

  6. XM_034578705.1 → XP_034434596.1  protein O-mannosyl-transferase TMTC1 isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.