U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sgca sarcoglycan, alpha [ Hippoglossus hippoglossus (Atlantic halibut) ]

Gene ID: 117753072, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSHHIG00000020001
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus hippoglossus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sgca in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fHipHip1.pri (GCF_009819705.1) 19 NC_047169.1 (4509361..4513552)

Chromosome 19 - NC_047169.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene collagen alpha-1(I) chain-like Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047169.1 Chromosome 19 Reference fHipHip1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus hippoglossus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fHipHip1.pri Primary Assembly

Genomic

  1. NC_047169.1 Reference fHipHip1.pri Primary Assembly

    Range
    4509361..4513552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034570938.1 → XP_034426829.1  alpha-sarcoglycan isoform X1

    Related
    ENSHHIP00000055222.1, ENSHHIT00000056846.1

  2. XM_034570940.1 → XP_034426831.1  alpha-sarcoglycan isoform X2

    Related
    ENSHHIP00000055221.1, ENSHHIT00000056845.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.