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pde9a phosphodiesterase 9A [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117750476, updated on 19-Mar-2024

Summary

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Gene symbol
pde9a
Gene description
phosphodiesterase 9A
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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See pde9a in Genome Data Viewer
Location:
chromosome: 21
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 21 NC_046986.1 (25726635..25762887, complement)

Chromosome 21 - NC_046986.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117750087 Neighboring gene WD repeat domain 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046986.1 Chromosome 21 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046986.1 Reference fCycLum1.pri

    Range
    25726635..25762887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034561714.1 → XP_034417605.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

    UniProtKB/TrEMBL
    A0A8C2XFA6
    Conserved Domains (1) summary
    pfam00233
    Location:242 → 472
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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