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LOC117750371 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117750371, updated on 19-Mar-2024

Summary

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Gene symbol
LOC117750371
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
See related
Ensembl:ENSCLMG00005020177
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See LOC117750371 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
14
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 21 NC_046986.1 (23390410..23399001, complement)

Chromosome 21 - NC_046986.1Genomic Context describing neighboring genes Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Neighboring gene glycerol kinase-like Neighboring gene small nucleolar RNA ACA64 Neighboring gene small nucleolar RNA ACA64 Neighboring gene nucleolar protein interacting with the FHA domain of MKI67

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046986.1 Chromosome 21 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046986.1 Reference fCycLum1.pri

    Range
    23390410..23399001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034561561.1 → XP_034417452.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    UniProtKB/TrEMBL
    A0A8C3AKU2
    Conserved Domains (1) summary
    pfam00233
    Location:246 → 479
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_034561560.1 → XP_034417451.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    UniProtKB/TrEMBL
    A0A8C3AKU2
    Related
    ENSCLMP00005043468.1, ENSCLMT00005045013.1
    Conserved Domains (1) summary
    pfam00233
    Location:250 → 483
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
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