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ano5b anoctamin 5b [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117749349, updated on 19-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
Ensembl:ENSCLMG00005005390
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 3 NC_046968.1 (12299495..12320596, complement)

Chromosome 3 - NC_046968.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046968.1 Chromosome 3 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046968.1 Reference fCycLum1.pri

    Range
    12299495..12320596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034559787.1 → XP_034415678.1  anoctamin-5b isoform X2

    UniProtKB/TrEMBL
    A0A8C2X576, A0A8C2Z1N3
    Related
    ENSCLMP00005013409.1, ENSCLMT00005014341.1
    Conserved Domains (2) summary
    pfam04547
    Location:279 → 862
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:59 → 276
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_034559767.1 → XP_034415658.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A8C2X576
    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_034559776.1 → XP_034415667.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A8C2X576
    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_034559758.1 → XP_034415649.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A8C2X576
    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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