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sgca sarcoglycan, alpha [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117748327, updated on 19-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSCLMG00005006968
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 19 NC_046984.1 (15589997..15596699)

Chromosome 19 - NC_046984.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene neurabin-2-like Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046984.1 Chromosome 19 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046984.1 Reference fCycLum1.pri

    Range
    15589997..15596699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034557953.1 → XP_034413844.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8C2Z1H7
    Conserved Domains (1) summary
    pfam05510
    Location:3 → 288
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_034557954.1 → XP_034413845.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8C2Z1H7
    Conserved Domains (1) summary
    pfam05510
    Location:3 → 288
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_034557952.1 → XP_034413843.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8C2Z1H7
    Related
    ENSCLMP00005013073.1, ENSCLMT00005014001.1
    Conserved Domains (1) summary
    pfam05510
    Location:29 → 351
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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