U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117747505 toll-like receptor 2 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117747505, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117747505
Gene description
toll-like receptor 2
See related
Ensembl:ENSCLMG00005016357
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117747505 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 18 NC_046983.1 (1378050..1389542)

Chromosome 18 - NC_046983.1Genomic Context describing neighboring genes Neighboring gene fibrinogen beta chain Neighboring gene lectin-like Neighboring gene protein FAM111A-like Neighboring gene ring finger protein 175 Neighboring gene uncharacterized LOC117747605 Neighboring gene small nucleolar RNA SNORD14

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_046983.1 Chromosome 18 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046983.1 Reference fCycLum1.pri

    Range
    1378050..1389542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034556788.1 → XP_034412679.1  toll-like receptor 2

    UniProtKB/TrEMBL
    A0A8C2ZXS7
    Related
    ENSCLMP00005034159.1, ENSCLMT00005035555.1
    Conserved Domains (4) summary
    smart00255
    Location:659 → 814
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:359 → 554
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:367 → 395
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:82 → 140
    LRR_8; Leucine rich repeat

RNA

  1. XR_004611405.1 RNA Sequence

  2. XR_004611406.1 RNA Sequence

  3. XR_004611407.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases