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LOC117746792 toll-like receptor 2 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117746792, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117746792
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
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Genomic context

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See LOC117746792 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 1 NC_046966.1 (20710035..20714910)

Chromosome 1 - NC_046966.1Genomic Context describing neighboring genes Neighboring gene meiotic nuclear divisions 1 homolog (S. cerevisiae) Neighboring gene transmembrane 131 like Neighboring gene protein PERCC1 Neighboring gene protein disulfide isomerase family A, member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046966.1 Chromosome 1 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046966.1 Reference fCycLum1.pri

    Range
    20710035..20714910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034556136.1 → XP_034412027.1  toll-like receptor 2

    UniProtKB/TrEMBL
    A0A8C3G6Z4
    Conserved Domains (6) summary
    PRK15370
    Location:355 → 491
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00255
    Location:636 → 778
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:31 → 175
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 74
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:31 → 52
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 132
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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