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pnpla4 patatin-like phospholipase domain containing 4 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117746084, updated on 18-Sep-2024

Summary

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Gene symbol
pnpla4
Gene description
patatin-like phospholipase domain containing 4
See related
Ensembl:ENSCLMG00005011054
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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See pnpla4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 2 NC_046967.1 (2916613..2925703, complement)

Chromosome 2 - NC_046967.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117741426 Neighboring gene NXPE family member 3-like Neighboring gene pseudouridine 5'-phosphatase Neighboring gene neuroligin 4 X-linked a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046967.1 Chromosome 2 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046967.1 Reference fCycLum1.pri

    Range
    2916613..2925703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034554906.1 → XP_034410797.1  patatin-like phospholipase domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2XQZ1
    Related
    ENSCLMP00005022275.1, ENSCLMT00005023351.1
    Conserved Domains (1) summary
    cd07222
    Location:5 → 249
    Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

  2. XM_034554923.1 → XP_034410814.1  patatin-like phospholipase domain-containing protein 4 isoform X3

    Conserved Domains (1) summary
    cl11396
    Location:5 → 159
    Patatin_and_cPLA2; Patatins and Phospholipases

  3. XM_034554917.1 → XP_034410808.1  patatin-like phospholipase domain-containing protein 4 isoform X2

    Conserved Domains (1) summary
    cl11396
    Location:5 → 159
    Patatin_and_cPLA2; Patatins and Phospholipases
Nucleotide Protein
Heading Accession and Version

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