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ndst3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117737885, updated on 19-Mar-2024

Summary

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Gene symbol
ndst3
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
See related
Ensembl:ENSCLMG00005007460
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See ndst3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 1 NC_046966.1 (15381724..15417499)

Chromosome 1 - NC_046966.1Genomic Context describing neighboring genes Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 Neighboring gene UDP glycosyltransferase 8 Neighboring gene serine protease 12 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046966.1 Chromosome 1 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046966.1 Reference fCycLum1.pri

    Range
    15381724..15417499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034544140.1 → XP_034400031.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C2X6Y4
    Related
    ENSCLMP00005014384.1, ENSCLMT00005015338.1
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_034544131.1 → XP_034400022.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2Z265
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_034544143.1 → XP_034400034.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A8C2X6Y4
    Related
    ENSCLMP00005014289.1, ENSCLMT00005015241.1
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 828
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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