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washc4 WASH complex subunit 4 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117731949, updated on 19-Mar-2024

Summary

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Gene symbol
washc4
Gene description
WASH complex subunit 4
See related
Ensembl:ENSCLMG00005003734
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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See washc4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
33
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 6 NC_046971.1 (17974492..17988219, complement)

Chromosome 6 - NC_046971.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 10 Neighboring gene CCR4-NOT transcription complex, subunit 2 Neighboring gene solute carrier family 41 member 2a Neighboring gene uncharacterized LOC117732406

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046971.1 Chromosome 6 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046971.1 Reference fCycLum1.pri

    Range
    17974492..17988219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034534527.1 → XP_034390418.1  WASH complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2WN32
    Related
    ENSCLMP00005006836.1, ENSCLMT00005007335.1
    Conserved Domains (3) summary
    pfam14744
    Location:605 → 949
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:33 → 598
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:966 → 1135
    WASH-7_C; WASH complex subunit 7, C-terminal

  2. XM_034534528.1 → XP_034390419.1  WASH complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C2WX21
    Conserved Domains (3) summary
    pfam14744
    Location:469 → 813
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:1 → 462
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:830 → 999
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
Heading Accession and Version

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