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LOC117731045 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117731045, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117731045
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
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Genomic context

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See LOC117731045 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 5 NC_046970.1 (1712190..1714663)

Chromosome 5 - NC_046970.1Genomic Context describing neighboring genes Neighboring gene calpastatin Neighboring gene proprotein convertase subtilisin/kexin type 1 Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene uncharacterized LOC117730692 Neighboring gene glutaredoxin (thioltransferase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046970.1 Chromosome 5 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046970.1 Reference fCycLum1.pri

    Range
    1712190..1714663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034533174.1 → XP_034389065.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8C2ZX17
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases