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galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117728708, updated on 19-Mar-2024

Summary

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Gene symbol
galnt18b
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
See related
Ensembl:ENSCLMG00005014422
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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See galnt18b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 3 NC_046968.1 (13985559..14051750, complement)

Chromosome 3 - NC_046968.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4, gamma 2a Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component Neighboring gene BTB (POZ) domain containing 10b Neighboring gene Ras association domain family member 10b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046968.1 Chromosome 3 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046968.1 Reference fCycLum1.pri

    Range
    13985559..14051750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034529501.1 → XP_034385392.1  polypeptide N-acetylgalactosaminyltransferase 18

    UniProtKB/TrEMBL
    A0A8C2ZNG5, A0A8C2ZNQ1
    Related
    ENSCLMP00005029577.1, ENSCLMT00005030920.1
    Conserved Domains (2) summary
    cd02510
    Location:159 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:473 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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