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LOC117727284 exostosin-1 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117727284, updated on 19-Mar-2024

Summary

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Gene symbol
LOC117727284
Gene description
exostosin-1
See related
Ensembl:ENSCLMG00005022137
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See LOC117727284 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 24 NC_046989.1 (13957992..14154945, complement)

Chromosome 24 - NC_046989.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM9 Neighboring gene 40S small subunit processome assembly factor 1 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene moronecidin-like Neighboring gene moronecidin-like Neighboring gene uncharacterized LOC117727287 Neighboring gene sterile alpha motif domain-containing protein 12-like Neighboring gene scavenger receptor class A, member 5 (putative)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046989.1 Chromosome 24 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046989.1 Reference fCycLum1.pri

    Range
    13957992..14154945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034527500.1 → XP_034383391.1  exostosin-1

    UniProtKB/TrEMBL
    A0A8C3GBB8
    Related
    ENSCLMP00005048407.1, ENSCLMT00005050056.1
    Conserved Domains (2) summary
    pfam03016
    Location:135 → 421
    Exostosin; Exostosin family
    pfam09258
    Location:505 → 750
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Molecular Biology Databases