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capn3b calpain 3b [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117727050, updated on 19-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
Ensembl:ENSCLMG00005015033
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
23
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 24 NC_046989.1 (9510487..9524515, complement)

Chromosome 24 - NC_046989.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117727051 Neighboring gene zinc finger protein 106-like Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin-1 Neighboring gene Rh associated glycoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046989.1 Chromosome 24 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046989.1 Reference fCycLum1.pri

    Range
    9510487..9524515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034527045.1 → XP_034382936.1  LOW QUALITY PROTEIN: calpain-3b

    UniProtKB/TrEMBL
    A0A8C3G357
    Related
    ENSCLMP00005031031.1, ENSCLMT00005032384.1
    Conserved Domains (4) summary
    cl25352
    Location:601 → 769
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 529
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:538 → 580
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
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