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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117725956, updated on 19-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSCLMG00005016213
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 23 NC_046988.1 (112869..178128)

Chromosome 23 - NC_046988.1Genomic Context describing neighboring genes Neighboring gene importin 8 Neighboring gene caprin family member 2 Neighboring gene G-protein coupled receptor 22-like Neighboring gene component of oligomeric golgi complex 5 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046988.1 Chromosome 23 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046988.1 Reference fCycLum1.pri

    Range
    112869..178128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034525867.1 → XP_034381758.1  protein O-mannosyl-transferase TMTC1 isoform X1

    UniProtKB/TrEMBL
    A0A8C3G4I4
    Conserved Domains (4) summary
    COG4700
    Location:400 → 653
    COG4700; Uncharacterized protein [Function unknown]
    TIGR02917
    Location:545 → 916
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:531 → 559
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:340 → 413
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_034525868.1 → XP_034381759.1  protein O-mannosyl-transferase TMTC1 isoform X2

    UniProtKB/TrEMBL
    A0A8C3G4I4
    Conserved Domains (4) summary
    COG4700
    Location:375 → 628
    COG4700; Uncharacterized protein [Function unknown]
    TIGR02917
    Location:520 → 891
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:506 → 534
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:315 → 388
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_034525869.1 → XP_034381760.1  protein O-mannosyl-transferase TMTC1 isoform X3

    UniProtKB/TrEMBL
    A0A8C3G4I4
    Conserved Domains (4) summary
    COG4700
    Location:368 → 621
    COG4700; Uncharacterized protein [Function unknown]
    TIGR02917
    Location:513 → 884
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:499 → 527
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:308 → 381
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_034525870.1 → XP_034381761.1  protein O-mannosyl-transferase TMTC1 isoform X4

    UniProtKB/TrEMBL
    A0A8C3G4I4
    Related
    ENSCLMP00005033923.1, ENSCLMT00005035315.1
    Conserved Domains (4) summary
    COG4700
    Location:343 → 596
    COG4700; Uncharacterized protein [Function unknown]
    TIGR02917
    Location:488 → 859
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_034525872.1 → XP_034381763.1  protein O-mannosyl-transferase TMTC1 isoform X5

    UniProtKB/TrEMBL
    A0A8C3G4I4
    Conserved Domains (4) summary
    COG4700
    Location:317 → 570
    COG4700; Uncharacterized protein [Function unknown]
    TIGR02917
    Location:462 → 833
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:448 → 476
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:257 → 330
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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