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Chpf2 chondroitin polymerizing factor 2 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117720349, updated on 19-Mar-2024

Summary

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Gene symbol
Chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSANLG00005016097
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Chpf2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 15 NC_047672.1 (1049465..1054914)

Chromosome 15 - NC_047672.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing with AAA domain 1 like Neighboring gene ATP-binding cassette sub-family F member 2 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene glycerol-3-phosphate dehydrogenase 1-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047672.1 Chromosome 15 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047672.1 Reference mArvNil1.pat.X

    Range
    1049465..1054914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034518777.1 → XP_034374668.1  chondroitin sulfate glucuronyltransferase

    Related
    ENSANLP00005020216.1, ENSANLT00005022901.1
    Conserved Domains (2) summary
    pfam05679
    Location:242 → 757
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177 → 269
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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