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Chst9 carbohydrate sulfotransferase 9 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117719671, updated on 19-Mar-2024

Summary

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Gene symbol
Chst9
Gene description
carbohydrate sulfotransferase 9
See related
EnsemblRapid:ENSANLG00005012506
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Chst9 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 14 NC_047671.1 (69989813..70255757)

Chromosome 14 - NC_047671.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA48 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene rRNA 2'-O-methyltransferase fibrillarin-like Neighboring gene aquaporin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047671.1 Chromosome 14 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047671.1 Reference mArvNil1.pat.X

    Range
    69989813..70255757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034517841.1 → XP_034373732.1  carbohydrate sulfotransferase 9 isoform X1

    Related
    ENSANLP00005015785.1, ENSANLT00005017866.1
    Conserved Domains (1) summary
    pfam03567
    Location:181 → 410
    Sulfotransfer_2; Sulfotransferase family

  2. XM_034517842.1 → XP_034373733.1  carbohydrate sulfotransferase 9 isoform X2

    Related
    ENSANLP00005015790.1, ENSANLT00005017873.1
    Conserved Domains (1) summary
    pfam03567
    Location:167 → 396
    Sulfotransfer_2; Sulfotransferase family

  3. XM_034517843.1 → XP_034373734.1  carbohydrate sulfotransferase 9 isoform X3

    Conserved Domains (1) summary
    pfam03567
    Location:135 → 364
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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