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Chsy3 chondroitin sulfate synthase 3 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117719512, updated on 19-Mar-2024

Summary

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Gene symbol
Chsy3
Gene description
chondroitin sulfate synthase 3
See related
EnsemblRapid:ENSANLG00005026760
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Chsy3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 14 NC_047671.1 (29343738..29585295, complement)

Chromosome 14 - NC_047671.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene KAT8 regulatory NSL complex subunit 2-like Neighboring gene elongation factor 1-alpha 1-like Neighboring gene membrane integral NOTCH2 associated receptor 2 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047671.1 Chromosome 14 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047671.1 Reference mArvNil1.pat.X

    Range
    29343738..29585295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034517627.1 → XP_034373518.1  chondroitin sulfate synthase 3

    Related
    ENSANLP00005033320.1, ENSANLT00005037928.1
    Conserved Domains (3) summary
    PRK14959
    Location:6 → 178
    PRK14959; DNA polymerase III subunits gamma and tau; Provisional
    pfam05679
    Location:330 → 866
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:170 → 400
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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