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B4galt4 beta-1,4-galactosyltransferase 4 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117718186, updated on 19-Mar-2024

Summary

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Gene symbol
B4galt4
Gene description
beta-1,4-galactosyltransferase 4
See related
EnsemblRapid:ENSANLG00005011612
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See B4galt4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 12 NC_047669.1 (25265011..25291492)

Chromosome 12 - NC_047669.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 39A Neighboring gene Rho GTPase activating protein 31 Neighboring gene uroplakin 1B Neighboring gene low molecular weight phosphotyrosine protein phosphatase-like Neighboring gene testis expressed 55

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047669.1 Chromosome 12 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047669.1 Reference mArvNil1.pat.X

    Range
    25265011..25291492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034515729.1 → XP_034371620.1  beta-1,4-galactosyltransferase 4

    Related
    ENSANLP00005014674.1, ENSANLT00005016607.1
    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_034515730.1 → XP_034371621.1  beta-1,4-galactosyltransferase 4

    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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