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Gys1 glycogen synthase 1 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117714877, updated on 18-Sep-2024

Summary

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Gene symbol
Gys1
Gene description
glycogen synthase 1
See related
EnsemblRapid:ENSANLG00005007150
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Gys1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 1 NC_047658.1 (19101493..19121071)

Chromosome 1 - NC_047658.1Genomic Context describing neighboring genes Neighboring gene RuvB like AAA ATPase 2 Neighboring gene luteinizing hormone subunit beta Neighboring gene ferritin light chain Neighboring gene BCL2 associated X, apoptosis regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047658.1 Chromosome 1 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen [starch] synthase, muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047658.1 Reference mArvNil1.pat.X

    Range
    19101493..19121071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034511607.1 → XP_034367498.1  glycogen [starch] synthase, muscle isoform X1

    Related
    ENSANLP00005008870.1, ENSANLT00005010104.1
    Conserved Domains (1) summary
    pfam05693
    Location:31 → 663
    Glycogen_syn; Glycogen synthase

  2. XM_034511614.1 → XP_034367505.1  glycogen [starch] synthase, muscle isoform X2

    Conserved Domains (1) summary
    pfam05693
    Location:31 → 660
    Glycogen_syn; Glycogen synthase
Nucleotide Protein
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