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Rai1 retinoic acid induced 1 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117711603, updated on 19-Mar-2024

Summary

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Gene symbol
Rai1
Gene description
retinoic acid induced 1
See related
EnsemblRapid:ENSANLG00005011239
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Rai1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 6 NC_047663.1 (61246369..61280387, complement)

Chromosome 6 - NC_047663.1Genomic Context describing neighboring genes Neighboring gene dynein regulatory complex subunit 3 Neighboring gene target of myb1 like 2 membrane trafficking protein Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene uncharacterized LOC117710298 Neighboring gene uncharacterized LOC117711605 Neighboring gene U6 spliceosomal RNA Neighboring gene phosphatidylethanolamine N-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047663.1 Chromosome 6 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid-induced protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047663.1 Reference mArvNil1.pat.X

    Range
    61246369..61280387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034507381.1 → XP_034363272.1  retinoic acid-induced protein 1

    Related
    ENSANLP00005014215.1, ENSANLT00005016089.1
    Conserved Domains (2) summary
    PHA03247
    Location:942 → 1201
    PHA03247; large tegument protein UL36; Provisional
    cl22851
    Location:1654 → 1883
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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