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Sgcd sarcoglycan delta [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117710634, updated on 19-Mar-2024

Summary

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Gene symbol
Sgcd
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSANLG00005007085
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Sgcd in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 6 NC_047663.1 (73444609..73818207)

Chromosome 6 - NC_047663.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-4-like Neighboring gene transmembrane protein 11, mitochondrial-like Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene hepatitis A virus cellular receptor 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047663.1 Chromosome 6 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047663.1 Reference mArvNil1.pat.X

    Range
    73444609..73818207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034505672.1 → XP_034361563.1  delta-sarcoglycan

    Related
    ENSANLP00005008796.1, ENSANLT00005010025.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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