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Xylt1 xylosyltransferase 1 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117710486, updated on 19-Mar-2024

Summary

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Gene symbol
Xylt1
Gene description
xylosyltransferase 1
See related
EnsemblRapid:ENSANLG00005004480
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Xylt1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 1 NC_047658.1 (84886394..85174199)

Chromosome 1 - NC_047658.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA17 Neighboring gene 60S ribosomal protein L18-like Neighboring gene ribosomal protein S15a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047658.1 Chromosome 1 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047658.1 Reference mArvNil1.pat.X

    Range
    84886394..85174199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034505312.1 → XP_034361203.1  xylosyltransferase 1

    Related
    ENSANLP00005005294.1, ENSANLT00005006151.1
    Conserved Domains (2) summary
    pfam12529
    Location:609 → 789
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:324 → 576
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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