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Ndst4 N-deacetylase and N-sulfotransferase 4 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117707037, updated on 19-Mar-2024

Summary

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Gene symbol
Ndst4
Gene description
N-deacetylase and N-sulfotransferase 4
See related
EnsemblRapid:ENSANLG00005009500
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Ndst4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 4 NC_047661.1 (102870719..103176540)

Chromosome 4 - NC_047661.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene rho GTPase-activating protein 20-like Neighboring gene RNA-binding protein 28-like Neighboring gene UDP glycosyltransferase 8 Neighboring gene arylsulfatase family member J

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047661.1 Chromosome 4 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047661.1 Reference mArvNil1.pat.X

    Range
    102870719..103176540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034500339.1 → XP_034356230.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    Related
    ENSANLP00005011882.1, ENSANLT00005013458.1
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_034500340.1 → XP_034356231.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Conserved Domains (2) summary
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:594 → 788
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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