U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

B4galnt4 beta-1,4-N-acetyl-galactosaminyltransferase 4 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117706236, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
B4galnt4
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 4
See related
EnsemblRapid:ENSANLG00005000355
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See B4galnt4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 1 NC_047658.1 (107611302..107622492)

Chromosome 1 - NC_047658.1Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 1-like Neighboring gene interferon-induced transmembrane protein 3 Neighboring gene plakophilin 3 Neighboring gene single Ig and TIR domain containing

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047658.1 Chromosome 1 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047658.1 Reference mArvNil1.pat.X

    Range
    107611302..107622492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034499413.1 → XP_034355304.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    Related
    ENSANLP00005000376.1, ENSANLT00005000442.1
    Conserved Domains (3) summary
    PHA03378
    Location:462 → 603
    PHA03378; EBNA-3B; Provisional
    cl08459
    Location:133 → 278
    PA14; PA14 domain
    cl11394
    Location:715 → 1015
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.