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Chpf chondroitin polymerizing factor [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117705283, updated on 19-Mar-2024

Summary

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Gene symbol
Chpf
Gene description
chondroitin polymerizing factor
See related
EnsemblRapid:ENSANLG00005007988
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 3 NC_047660.1 (108394441..108399325)

Chromosome 3 - NC_047660.1Genomic Context describing neighboring genes Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene transmembrane protein 198 Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene GDP-mannose pyrophosphorylase A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047660.1 Chromosome 3 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047660.1 Reference mArvNil1.pat.X

    Range
    108394441..108399325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034497741.1 → XP_034353632.1  chondroitin sulfate synthase 2 isoform X2

    Conserved Domains (2) summary
    pfam05679
    Location:100 → 599
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:32 → 121
    Galactosyl_T; Galactosyltransferase

  2. XM_034497740.1 → XP_034353631.1  chondroitin sulfate synthase 2 isoform X1

    Related
    ENSANLP00005009929.1, ENSANLT00005011276.1
    Conserved Domains (2) summary
    pfam05679
    Location:264 → 763
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:196 → 285
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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