U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Asph aspartate beta-hydroxylase [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117698610, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Asph
Gene description
aspartate beta-hydroxylase
See related
EnsemblRapid:ENSANLG00005021944
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Asph in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) Unplaced Scaffold NW_023044995.1 (21643219..21843494)

NW_023044995.1Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 6 Neighboring gene uncharacterized LOC117698714 Neighboring gene U4 spliceosomal RNA Neighboring gene clavesin 1 Neighboring gene uncharacterized LOC117698675

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_023044995 Unplaced Scaffold Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NW_023044995.1 Reference mArvNil1.pat.X

    Range
    21643219..21843494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034490155.1 → XP_034346046.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 390
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:408 → 594
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:525 → 549
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:658 → 812
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_034490158.1 → XP_034346049.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Related
    ENSANLP00005028665.1, ENSANLT00005032673.1
    Conserved Domains (4) summary
    pfam05279
    Location:61 → 365
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:383 → 569
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:500 → 524
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:633 → 787
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_034490156.1 → XP_034346047.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 389
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:407 → 593
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:524 → 548
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:657 → 811
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_034490167.1 → XP_034346058.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Related
    ENSANLP00005028899.1, ENSANLT00005032928.1
    Conserved Domains (1) summary
    pfam05279
    Location:61 → 153
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_034490165.1 → XP_034346056.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Conserved Domains (1) summary
    pfam05279
    Location:61 → 223
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_034490157.1 → XP_034346048.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 375
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:393 → 579
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:510 → 534
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:643 → 797
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_034490162.1 → XP_034346053.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Related
    ENSANLP00005028428.1, ENSANLT00005032399.1
    Conserved Domains (4) summary
    pfam05279
    Location:61 → 328
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:346 → 532
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:463 → 487
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:596 → 750
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_034490163.1 → XP_034346054.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Related
    ENSANLP00005028591.1, ENSANLT00005032589.1
    Conserved Domains (4) summary
    pfam05279
    Location:61 → 313
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:331 → 517
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:448 → 472
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:581 → 735
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_034490168.1 → XP_034346059.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    Conserved Domains (1) summary
    pfam05279
    Location:25 → 187
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  10. XM_034490166.1 → XP_034346057.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    Conserved Domains (1) summary
    pfam05279
    Location:25 → 202
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_034490159.1 → XP_034346050.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 354
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:372 → 558
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:489 → 513
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:622 → 776
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  12. XM_034490161.1 → XP_034346052.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 339
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:357 → 543
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 498
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:607 → 761
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  13. XM_034490164.1 → XP_034346055.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 277
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:295 → 481
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:412 → 436
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:545 → 699
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.