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Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117696338, updated on 19-Mar-2024

Summary

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Gene symbol
Tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
EnsemblRapid:ENSANLG00005019244
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Tmtc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) Unplaced Scaffold NW_023044992.1 (23666251..23709165, complement)

NW_023044992.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L17-like Neighboring gene KIT ligand Neighboring gene centrosomal protein 290 Neighboring gene chromosome unknown C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023044992 Unplaced Scaffold Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NW_023044992.1 Reference mArvNil1.pat.X

    Range
    23666251..23709165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034487162.1 → XP_034343053.1  protein O-mannosyl-transferase TMTC3

    Related
    ENSANLP00005023957.1, ENSANLT00005027224.1
    Conserved Domains (4) summary
    TIGR02917
    Location:443 → 813
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:535 → 562
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:264 → 336
    DUF1736; Domain of unknown function (DUF1736)
    cl28891
    Location:799 → 841
    ParB_N_Srx; ParB N-terminal domain and sulfiredoxin protein-related families
Nucleotide Protein
Heading Accession and Version

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