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LOC117694287 galactoside 2-alpha-L-fucosyltransferase 3 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117694287, updated on 9-Nov-2023

Summary

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Gene symbol
LOC117694287
Gene description
galactoside 2-alpha-L-fucosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
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Genomic context

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See LOC117694287 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 1 NC_047658.1 (19328002..19334455, complement)

Chromosome 1 - NC_047658.1Genomic Context describing neighboring genes Neighboring gene MEF2 activating motif and SAP domain containing transcriptional regulator Neighboring gene fucosyltransferase 2 (H blood group) Neighboring gene netrin 5 Neighboring gene carbonic anhydrase 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047658.1 Chromosome 1 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047658.1 Reference mArvNil1.pat.X

    Range
    19328002..19334455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034485121.1 → XP_034341012.1  galactoside 2-alpha-L-fucosyltransferase 3

    Conserved Domains (1) summary
    pfam01531
    Location:55 → 361
    Glyco_transf_11; Glycosyl transferase family 11
Nucleotide Protein
Heading Accession and Version

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