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Hcfc1 host cell factor C1 [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117694168, updated on 19-Mar-2024

Summary

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Gene symbol
Hcfc1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSANLG00005022490
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Hcfc1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
27
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) X NC_047679.1 (128570417..128595028, complement)

Chromosome X - NC_047679.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene methyl-CpG binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047679.1 Chromosome X Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047679.1 Reference mArvNil1.pat.X

    Range
    128570417..128595028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034484996.1 → XP_034340887.1  host cell factor 1 isoform X4

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1867 → 1896
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  2. XM_034484995.1 → XP_034340886.1  host cell factor 1 isoform X3

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1868 → 1897
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  3. XM_034484994.1 → XP_034340885.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1911 → 1940
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  4. XM_034484993.1 → XP_034340884.1  host cell factor 1 isoform X1

    Related
    ENSANLP00005028066.1, ENSANLT00005031980.1
    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1912 → 1941
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  5. XM_034484997.1 → XP_034340888.1  host cell factor 1 isoform X5

    Conserved Domains (3) summary
    PLN02193
    Location:27 → 173
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1813 → 1842
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:101 → 154
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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