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Pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Arvicanthis niloticus (Nile rat) ]

Gene ID: 117693761, updated on 19-Mar-2024

Summary

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Gene symbol
Pomgnt2
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
See related
EnsemblRapid:ENSANLG00005025936
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicanthis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
Orthologs
human mouse all
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Genomic context

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See Pomgnt2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
100 current mArvNil1.pat.X (GCF_011762505.1) 21 NC_047678.1 (42221445..42242261, complement)

Chromosome 21 - NC_047678.1Genomic Context describing neighboring genes Neighboring gene KRAB box domain containing 1 Neighboring gene golgi associated kinase 1A Neighboring gene small nucleolar RNA SNORA48 Neighboring gene SNF related kinase Neighboring gene anoctamin 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047678.1 Chromosome 21 Reference mArvNil1.pat.X

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvNil1.pat.X

Genomic

  1. NC_047678.1 Reference mArvNil1.pat.X

    Range
    42221445..42242261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034484509.1 → XP_034340400.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    Related
    ENSANLP00005032180.1, ENSANLT00005036652.1
    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl15705
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)

  2. XM_034484510.1 → XP_034340401.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl15705
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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