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ATRNL1 attractin like 1 [ Pantherophis guttatus ]

Gene ID: 117678730, updated on 19-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
EnsemblRapid:ENSPGUG00005018255
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844092.1 (16548574..17047228, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010877.1 (44707398..45184370)

NW_026844092.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein Q-like Neighboring gene GDNF family receptor alpha 1 Neighboring gene uncharacterized LOC132709432 Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene actin binding LIM protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844092.1 Reference CU_Pguttatus_1

    Range
    16548574..17047228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034440210.2 → XP_034296101.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9DUB7
    Related
    ENSPGUP00005025841.1
    Conserved Domains (8) summary
    PHA03098
    Location:308 → 574
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:91 → 206
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1011 → 1056
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:466 → 515
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:887 → 933
    PSI; Plexin repeat
    pfam13854
    Location:350 → 390
    Kelch_5; Kelch motif
    cl02432
    Location:746 → 872
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl19567
    Location:233 → 278
    DSL; Delta serrate ligand

  2. XM_034440211.2 → XP_034296102.1  attractin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9DJX7
    Conserved Domains (5) summary
    PHA03098
    Location:308 → 574
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:91 → 206
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:466 → 515
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:350 → 390
    Kelch_5; Kelch motif
    cl19567
    Location:233 → 278
    DSL; Delta serrate ligand

  3. XM_034440212.2 → XP_034296103.1  attractin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P9DK25
    Conserved Domains (5) summary
    PHA03098
    Location:308 → 536
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:91 → 206
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:303 → 347
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:350 → 390
    Kelch_5; Kelch motif
    cl19567
    Location:233 → 278
    DSL; Delta serrate ligand
Nucleotide Protein
Heading Accession and Version

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