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PNPLA6 patatin like phospholipase domain containing 6 [ Pantherophis guttatus ]

Gene ID: 117677544, updated on 19-Mar-2024

Summary

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Gene symbol
PNPLA6
Gene description
patatin like phospholipase domain containing 6
See related
EnsemblRapid:ENSPGUG00005019788
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See PNPLA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844096.1 (11175592..11312186)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010866.1 (974511..1109106)

NW_026844096.1Genomic Context describing neighboring genes Neighboring gene ultra-long-chain fatty acid omega-hydroxylase Neighboring gene mucolipin TRP cation channel 1 Neighboring gene uncharacterized LOC132709517 Neighboring gene CD209 antigen-like protein D Neighboring gene uncharacterized LOC132709516

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844096.1 Reference CU_Pguttatus_1

    Range
    11175592..11312186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060683426.1 → XP_060539409.1  patatin-like phospholipase domain-containing protein 6 isoform X2

  2. XM_034437810.2 → XP_034293701.1  patatin-like phospholipase domain-containing protein 6 isoform X8

    UniProtKB/TrEMBL
    A0A6P9DN10
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1301
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  3. XM_034437817.2 → XP_034293708.1  patatin-like phospholipase domain-containing protein 6 isoform X7

    UniProtKB/TrEMBL
    A0A6P9DBA8
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1252
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  4. XM_034437812.2 → XP_034293703.1  patatin-like phospholipase domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A6P9DBA3
    Related
    ENSPGUP00005028345.1
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1301
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  5. XM_034437814.2 → XP_034293705.1  patatin-like phospholipase domain-containing protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A6P9DRC2
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1262
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  6. XM_034437813.2 → XP_034293704.1  patatin-like phospholipase domain-containing protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A6P9DEI0
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1262
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  7. XM_034437816.2 → XP_034293707.1  patatin-like phospholipase domain-containing protein 6 isoform X6

    UniProtKB/TrEMBL
    A0A6P9DD38
    Related
    ENSPGUP00005028351.1
    Conserved Domains (2) summary
    cd07225
    Location:957 → 1223
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:629 → 737
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  8. XM_034437815.2 → XP_034293706.1  patatin-like phospholipase domain-containing protein 6 isoform X5

    UniProtKB/TrEMBL
    A0A6P9DN14
    Conserved Domains (2) summary
    cd07225
    Location:908 → 1252
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:580 → 688
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  9. XM_034437818.2 → XP_034293709.1  patatin-like phospholipase domain-containing protein 6 isoform X9

    UniProtKB/TrEMBL
    A0A6P9DEI4
    Related
    ENSPGUP00005028354.1
    Conserved Domains (2) summary
    cd07225
    Location:777 → 1121
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:449 → 557
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

RNA

  1. XR_004594812.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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