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SAMD13 sterile alpha motif domain containing 13 [ Pantherophis guttatus ]

Gene ID: 117677129, updated on 19-Mar-2024

Summary

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Gene symbol
SAMD13
Gene description
sterile alpha motif domain containing 13
See related
EnsemblRapid:ENSPGUG00005010503
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See SAMD13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844027.1 (67372065..67411698)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010864.1 (5425853..5465484)

NW_026844027.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase like 7 Neighboring gene protein kinase cAMP-activated catalytic subunit beta Neighboring gene uncharacterized LOC117677130 Neighboring gene uricase-like Neighboring gene ribosome production factor 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844027.1 Reference CU_Pguttatus_1

    Range
    67372065..67411698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034437105.2 → XP_034292996.1  sterile alpha motif domain-containing protein 13 isoform X4

    UniProtKB/TrEMBL
    A0A6P9DL69
    Conserved Domains (1) summary
    cd09583
    Location:42 → 110
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  2. XM_034437104.2 → XP_034292995.1  sterile alpha motif domain-containing protein 13 isoform X3

    UniProtKB/TrEMBL
    A0A6P9DP54
    Related
    ENSPGUP00005014855.1
    Conserved Domains (1) summary
    cd09583
    Location:46 → 114
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  3. XM_034437106.2 → XP_034292997.1  sterile alpha motif domain-containing protein 13 isoform X5

    UniProtKB/TrEMBL
    A0A6P9DB66
    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  4. XM_034437102.2 → XP_034292993.1  sterile alpha motif domain-containing protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A6P9D9S0
    Conserved Domains (1) summary
    cd09583
    Location:49 → 117
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  5. XM_034437101.2 → XP_034292992.1  sterile alpha motif domain-containing protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A6P9D9S0
    Conserved Domains (1) summary
    cd09583
    Location:49 → 117
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  6. XM_034437100.2 → XP_034292991.1  sterile alpha motif domain-containing protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A6P9DL66
    Conserved Domains (1) summary
    COG0484
    Location:2 → 158
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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