U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OGDH oxoglutarate dehydrogenase [ Pantherophis guttatus ]

Gene ID: 117677039, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
OGDH
Gene description
oxoglutarate dehydrogenase
See related
EnsemblRapid:ENSPGUG00005014577
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See OGDH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844048.1 (8644791..8706160)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010863.1 (8613500..8674869)

NW_026844048.1Genomic Context describing neighboring genes Neighboring gene interleukin-36 receptor antagonist protein-like Neighboring gene interleukin-36 receptor antagonist protein-like Neighboring gene uncharacterized LOC132712369 Neighboring gene zinc finger MIZ-type containing 2 Neighboring gene uncharacterized LOC117677042 Neighboring gene uncharacterized LOC132712370

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
2-oxoglutarate dehydrogenase complex component E1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844048.1 Reference CU_Pguttatus_1

    Range
    8644791..8706160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034436918.1 → XP_034292809.1  2-oxoglutarate dehydrogenase complex component E1 isoform X4

    UniProtKB/TrEMBL
    A0A6P9DCP2
    Related
    ENSPGUP00005020631.1, ENSPGUT00005021437.1
    Conserved Domains (1) summary
    PRK09404
    Location:50 → 1028
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  2. XM_034436915.1 → XP_034292806.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9DKN7
    Related
    ENSPGUP00005020669.1, ENSPGUT00005021473.1
    Conserved Domains (1) summary
    PRK09404
    Location:50 → 1024
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  3. XM_034436917.1 → XP_034292808.1  2-oxoglutarate dehydrogenase complex component E1 isoform X3

    UniProtKB/TrEMBL
    A0A6P9D9A8
    Related
    ENSPGUP00005020753.1, ENSPGUT00005021559.1
    Conserved Domains (1) summary
    PRK09404
    Location:50 → 1009
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  4. XM_034436916.1 → XP_034292807.1  2-oxoglutarate dehydrogenase complex component E1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9DAK3
    Related
    ENSPGUP00005020712.1, ENSPGUT00005021517.1
    Conserved Domains (1) summary
    PRK09404
    Location:50 → 1013
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.