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SYNJ1 synaptojanin 1 [ Pantherophis guttatus ]

Gene ID: 117674872, updated on 19-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSPGUG00005006270
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844016.1 (44253354..44312153, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010688.1 (10242910..10301716, complement)

NW_026844016.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC117675467

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844016.1 Reference CU_Pguttatus_1

    Range
    44253354..44312153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034433270.2 → XP_034289161.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9D0C9
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1287
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_034433498.2 → XP_034289389.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P9D102
    Conserved Domains (4) summary
    PHA03247
    Location:1054 → 1284
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:533 → 868
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:867 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_034433579.2 → XP_034289470.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A6P9DDI6
    Conserved Domains (4) summary
    PHA03247
    Location:1049 → 1279
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:528 → 863
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:862 → 1004
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_034433417.2 → XP_034289308.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9D0N8
    Conserved Domains (3) summary
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_034433663.2 → XP_034289554.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A6P9D1M8
    Related
    ENSPGUP00005008695.1
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1274
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_034433127.2 → XP_034289018.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9D0C9
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1287
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_034433190.2 → XP_034289081.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9D0C9
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1287
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_034433337.2 → XP_034289228.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9D0C9
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1287
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_034433901.1 → XP_034289792.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A6P9D2A4
    Related
    ENSPGUP00005008752.1, ENSPGUT00005009102.1
    Conserved Domains (4) summary
    COG5329
    Location:44 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:975 → 1261
    Atrophin-1; Atrophin-1 family
    cl00490
    Location:533 → 868
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:867 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily

  10. XM_034433823.1 → XP_034289714.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A6P9D278
    Conserved Domains (4) summary
    PHA03247
    Location:1057 → 1294
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_034433744.1 → XP_034289635.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A6P9DE20
    Conserved Domains (4) summary
    COG5329
    Location:44 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:978 → 1264
    Atrophin-1; Atrophin-1 family
    cl00490
    Location:536 → 871
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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