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B4GALT6 beta-1,4-galactosyltransferase 6 [ Pantherophis guttatus ]

Gene ID: 117672737, updated on 19-Mar-2024

Summary

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Gene symbol
B4GALT6
Gene description
beta-1,4-galactosyltransferase 6
See related
EnsemblRapid:ENSPGUG00005005503
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See B4GALT6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844077.1 (45098400..45122826)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010796.1 (27590427..27614853, complement)

NW_026844077.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 8 Neighboring gene cation channel sperm associated auxiliary subunit delta Neighboring gene transthyretin Neighboring gene desmoglein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844077.1 Reference CU_Pguttatus_1

    Range
    45098400..45122826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034429661.1 → XP_034285552.1  beta-1,4-galactosyltransferase 6 isoform X3

    UniProtKB/TrEMBL
    A0A6P9CR08
    Conserved Domains (1) summary
    cd00899
    Location:111 → 327
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_034429658.2 → XP_034285549.1  beta-1,4-galactosyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A6P9CRA3
    Related
    ENSPGUP00005007564.1
    Conserved Domains (1) summary
    cd00899
    Location:155 → 371
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  3. XM_034429659.2 → XP_034285550.1  beta-1,4-galactosyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A6P9D1K5
    Conserved Domains (1) summary
    cl11394
    Location:155 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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