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LYPD6 LY6/PLAUR domain containing 6 [ Pantherophis guttatus ]

Gene ID: 117670048, updated on 19-Mar-2024

Summary

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Gene symbol
LYPD6
Gene description
LY6/PLAUR domain containing 6
See related
EnsemblRapid:ENSPGUG00005013215
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See LYPD6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844021.1 (104826918..104893248)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010694.1 (21212451..21272055)

NW_026844021.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 5C Neighboring gene uncharacterized LOC117670022 Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene metabolism of cobalamin associated D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine receptor inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844021.1 Reference CU_Pguttatus_1

    Range
    104826918..104893248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034424919.2 → XP_034280810.1  ly6/PLAUR domain-containing protein 6

    UniProtKB/TrEMBL
    A0A6P9CLQ1
    Conserved Domains (1) summary
    pfam16975
    Location:41 → 145
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6

  2. XM_034424929.2 → XP_034280820.1  ly6/PLAUR domain-containing protein 6

    UniProtKB/TrEMBL
    A0A6P9CLQ1
    Related
    ENSPGUP00005018734.1
    Conserved Domains (1) summary
    pfam16975
    Location:41 → 145
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
Nucleotide Protein
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