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LCT lactase [ Pantherophis guttatus ]

Gene ID: 117669655, updated on 19-Mar-2024

Summary

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Gene symbol
LCT
Gene description
lactase
See related
EnsemblRapid:ENSPGUG00005007569
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See LCT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844021.1 (97131270..97164110, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010694.1 (13570264..13603104, complement)

NW_026844021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117669679 Neighboring gene UBX domain protein 4 Neighboring gene minichromosome maintenance complex component 6 Neighboring gene aspartyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase/phlorizin hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844021.1 Reference CU_Pguttatus_1

    Range
    97131270..97164110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034424272.1 → XP_034280163.1  lactase/phlorizin hydrolase

    UniProtKB/TrEMBL
    A0A6P9C7N8
    Related
    ENSPGUP00005010617.1, ENSPGUT00005011026.1
    Conserved Domains (2) summary
    pfam00232
    Location:906 → 1373
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:1382 → 1846
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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