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SPTSSA serine palmitoyltransferase small subunit A [ Pantherophis guttatus ]

Gene ID: 117665772, updated on 19-Jun-2024

Summary

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Gene symbol
SPTSSA
Gene description
serine palmitoyltransferase small subunit A
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See SPTSSA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844021.1 (22662695..22667467)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010720.1 (51876054..51880779, complement)

NW_026844021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117665775 Neighboring gene sorting nexin 6 Neighboring gene E2F associated phosphoprotein Neighboring gene uncharacterized LOC117666180 Neighboring gene egl-9 family hypoxia inducible factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844021.1 Reference CU_Pguttatus_1

    Range
    22662695..22667467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034418003.2 → XP_034273894.1  serine palmitoyltransferase small subunit A

    UniProtKB/TrEMBL
    A0A6P9BV98
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 60
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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