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CHKA choline kinase alpha [ Pantherophis guttatus ]

Gene ID: 117665173, updated on 10-Oct-2024

Summary

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Gene symbol
CHKA
Gene description
choline kinase alpha
See related
EnsemblRapid:ENSPGUG00005003459
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See CHKA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844021.1 (73089939..73131410, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010720.1 (1699404..1740877)

NW_026844021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132710624 Neighboring gene ribonuclease inhibitor-like Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized LOC132710742

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844021.1 Reference CU_Pguttatus_1

    Range
    73089939..73131410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060687757.1 → XP_060543740.1  choline kinase alpha isoform X2

  2. XM_034416771.2 → XP_034272662.1  choline kinase alpha isoform X1

    UniProtKB/TrEMBL
    A0A6P9BN15, A0A6P9BYU7
    Related
    ENSPGUP00005004903.1
    Conserved Domains (1) summary
    cd05156
    Location:114 → 455
    ChoK_euk; Euykaryotic Choline Kinase

  3. XM_034416773.2 → XP_034272664.1  choline kinase alpha isoform X3

    UniProtKB/TrEMBL
    A0A6P9BRW5
    Conserved Domains (1) summary
    cd05156
    Location:1 → 330
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein
Heading Accession and Version

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