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SGCA sarcoglycan alpha [ Pantherophis guttatus ]

Gene ID: 117664505, updated on 19-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSPGUG00005010140
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844035.1 (2572206..2637466, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010717.1 (2511584..2576956, complement)

NW_026844035.1Genomic Context describing neighboring genes Neighboring gene MAGUK p55 scaffold protein 2 Neighboring gene collagen type I alpha 1 chain Neighboring gene histone H1-like Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14 Neighboring gene pyruvate dehydrogenase kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844035.1 Reference CU_Pguttatus_1

    Range
    2572206..2637466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034415443.2 → XP_034271334.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P9BMT6
    Related
    ENSPGUP00005014344.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 359
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_034415444.2 → XP_034271335.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P9BUN3
    Conserved Domains (1) summary
    pfam05510
    Location:12 → 307
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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