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CPT1C carnitine palmitoyltransferase 1C [ Pantherophis guttatus ]

Gene ID: 117664451, updated on 19-Mar-2024

Summary

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Gene symbol
CPT1C
Gene description
carnitine palmitoyltransferase 1C
See related
EnsemblRapid:ENSPGUG00005006794
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See CPT1C in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844035.1 (806986..847354, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010717.1 (757370..797832, complement)

NW_026844035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117665006 Neighboring gene testis-specific serine kinase substrate-like Neighboring gene pro-adrenomedullin-like Neighboring gene paired box protein Pax-6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, brain isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844035.1 Reference CU_Pguttatus_1

    Range
    806986..847354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034415352.2 → XP_034271243.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X1

    UniProtKB/TrEMBL
    A0A6P9BTK6
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  2. XM_034415355.2 → XP_034271246.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X4

    UniProtKB/TrEMBL
    A0A6P9BTL0
    Conserved Domains (2) summary
    pfam00755
    Location:67 → 657
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  3. XM_034415354.2 → XP_034271245.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X3

    UniProtKB/TrEMBL
    A0A6P9BUD1
    Conserved Domains (1) summary
    pfam00755
    Location:100 → 690
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

  4. XM_034415353.2 → XP_034271244.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X2

    UniProtKB/TrEMBL
    A0A6P9BMJ4
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 760
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  5. XM_034415349.2 → XP_034271240.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X1

    UniProtKB/TrEMBL
    A0A6P9BTK6
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  6. XM_034415350.1 → XP_034271241.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X1

    UniProtKB/TrEMBL
    A0A6P9BTK6
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  7. XM_034415351.2 → XP_034271242.1  carnitine O-palmitoyltransferase 1, brain isoform isoform X1

    UniProtKB/TrEMBL
    A0A6P9BTK6
    Related
    ENSPGUP00005009439.1
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus
Nucleotide Protein
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