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LOC117660588 alpha-(1,3)-fucosyltransferase 4-like [ Pantherophis guttatus ]

Gene ID: 117660588, updated on 30-Nov-2023

Summary

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Gene symbol
LOC117660588
Gene description
alpha-(1,3)-fucosyltransferase 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
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Genomic context

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See LOC117660588 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844016.1 (6191681..6192980)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010689.1 (5715184..5716491)

NW_026844016.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 49 Neighboring gene chromosome unknown C11orf97 homolog Neighboring gene 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like Neighboring gene piwi like RNA-mediated gene silencing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,3)-fucosyltransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844016.1 Reference CU_Pguttatus_1

    Range
    6191681..6192980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034408744.2 → XP_034264635.1  alpha-(1,3)-fucosyltransferase 4-like

    UniProtKB/TrEMBL
    A0A6P9B9E5
    Conserved Domains (2) summary
    pfam00852
    Location:192 → 362
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:73 → 175
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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