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GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Pantherophis guttatus ]

Gene ID: 117656202, updated on 19-Mar-2024

Summary

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Gene symbol
GDPD1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
See related
EnsemblRapid:ENSPGUG00005019154
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See GDPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844043.1 (25206047..25256628, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010914.1 (178460..227886)

NW_026844043.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 37 Neighboring gene CHD1 helical C-terminal domain containing 1 Neighboring gene yippee like 2 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene proline rich 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysophospholipase D GDPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844043.1 Reference CU_Pguttatus_1

    Range
    25206047..25256628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034404307.1 → XP_034260198.1  lysophospholipase D GDPD1

    UniProtKB/TrEMBL
    A0A6P9AP59
    Related
    ENSPGUP00005027314.1, ENSPGUT00005028380.1
    Conserved Domains (1) summary
    cd08612
    Location:13 → 309
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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