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LOC117656184 glucoside xylosyltransferase 1 [ Pantherophis guttatus ]

Gene ID: 117656184, updated on 30-Nov-2023

Summary

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Gene symbol
LOC117656184
Gene description
glucoside xylosyltransferase 1
See related
EnsemblRapid:ENSPGUG00005019081
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Also known as
GXYLT1
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Genomic context

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See LOC117656184 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844024.1 (1195055..1283750, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010912.1 (1005828..1086498, complement)

NW_026844024.1Genomic Context describing neighboring genes Neighboring gene contactin-1-like Neighboring gene uncharacterized LOC132711045 Neighboring gene uncharacterized LOC132711046 Neighboring gene YY1-associated factor 2 Neighboring gene periphilin-1-like Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1 Neighboring gene uncharacterized LOC132711049

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1; retrotransposon-derived protein PEG10; uncharacterized protein LOC117656184

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844024.1 Reference CU_Pguttatus_1

    Range
    1195055..1283750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034404282.2 → XP_034260173.1  glucoside xylosyltransferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P9AP34
    Related
    ENSPGUP00005027219.1
    Conserved Domains (1) summary
    cd06430
    Location:119 → 420
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

  2. XM_034404284.2 → XP_034260175.1  glucoside xylosyltransferase 1 isoform X6

    UniProtKB/TrEMBL
    A0A6P9AUD1
    Related
    ENSPGUP00005027223.1
    Conserved Domains (1) summary
    cd06430
    Location:88 → 389
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

  3. XM_060689033.1 → XP_060545016.1  glucoside xylosyltransferase 1 isoform X8

  4. XM_034404281.2 → XP_034260172.1  glucoside xylosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9ANL0
    Conserved Domains (1) summary
    cl11394
    Location:254 → 513
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_034404280.2 → XP_034260171.1  glucoside xylosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9AVV1
    Conserved Domains (1) summary
    cd06430
    Location:254 → 555
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

  6. XM_034404285.2 → XP_034260176.1  glucoside xylosyltransferase 1 isoform X7

    UniProtKB/TrEMBL
    A0A6P9AVV7
    Conserved Domains (1) summary
    cd06430
    Location:50 → 351
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

  7. XM_060689031.1 → XP_060545014.1  uncharacterized protein LOC117656184 isoform X3

  8. XM_060689032.1 → XP_060545015.1  retrotransposon-derived protein PEG10 isoform X5

Nucleotide Protein
Heading Accession and Version

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